About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137504491_137505790_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137504491 - 137505790
Intron Length:
1300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
CTATGTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTCTCTGTATTT
Flanking Amino Acid:
SDARCVFDMAEEFGFKMNML
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
66
45.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.2
0.52
0.9
70.6
39.7
Minor 5ss
38
-1.3
2.8
52.4
44.2
Minor BPS
47.4
-0.1
2.2
67.71
44.1

Associated Gene:

Gene:
AZIN1
Ensembl Gene ID:
ENSAPLG00000003774
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029379
137489196 - 137508882
19687
ENSAPLT00000024263
137489196 - 137509392
20197
ENSAPLT00000003897
137483649 - 137508882
25234