About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137506970_137507547_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137506970 - 137507547
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
VEYDKLLPSGMEQARNDDEP
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.1
0.79
0.8
77.3
36.7
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
AZIN1
Ensembl Gene ID:
ENSAPLG00000003774
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003897
137483649 - 137508882
25234
ENSAPLT00000029379
137489196 - 137508882
19687
ENSAPLT00000024263
137489196 - 137509392
20197