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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137520552_137520945_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
137520552 - 137520945
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
CTGACCCAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TTTCCCCTGACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
57.7
0.17
1
51.5
37
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
67.8
0.54
1.7
80.84
33.2

Associated Gene:

Gene:
KLF10
Ensembl Gene ID:
ENSAPLG00000028539
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027874
137520447 - 137524435
3989