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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137521186_137521285_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137521186 - 137521285
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAC
U12 Branch Point Sequence:
CCCCCCTCACCT
Flanking Amino Acid:
AADFNTIPAFCLTPPYSPSD
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
76.5
38.6
Major BPS
59.3
0.23
1.3
61.4
43.2
Major PPT
78.8
0.65
0.7
73.4
24.8
Minor 5ss
42.7
-0.8
3.1
65.3
39.9
Minor BPS
47.5
-0.1
1.9
61.08
48.3

Associated Gene:

Gene:
KLF10
Ensembl Gene ID:
ENSAPLG00000028539
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027874
137520447 - 137524435
3989