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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137522178_137523056_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137522178 - 137523056
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTCGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATGGTATTT
Flanking Amino Acid:
HLKAHVRTHTGEKPFSCSWK
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
59.2
45.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
29.5
-2.3
2.9
36.4
40.5
Minor BPS
40.9
-0.6
2.6
67.45
44.1

Associated Gene:

Gene:
KLF10
Ensembl Gene ID:
ENSAPLG00000028539
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027874
137520447 - 137524435
3989