Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137572546_137572730_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

137572546 - 137572730

Intron Length:

185

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATTAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAAATATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTGTTTTTAAAT

Flanking Amino Acid:

GPNHAAFLLEDGRVCRIGFS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.88

0.9

80.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

76.2

0.59

0.9

71.6

37.5

Minor 5ss

39.8

-1.1

2.9

45.2

Minor BPS

72.8

0.79

1.3

84.4

36.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004191

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045921

137523057 - 137620279

97223

ENSAPLT00000039266

137523057 - 137620279

97223

ENSAPLT00000004415

137523057 - 137620279

97223