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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137572808_137573582_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137572808 - 137573582
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TGTTTTGTGACT
Flanking Amino Acid:
LELGKPDNNDGSKLSSGSGA
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
35.1
Major BPS
74.2
0.6
1
67
39.4
Major PPT
88
0.85
0.7
85.5
27.9
Minor 5ss
33.3
-1.9
2.9
35.7
40.8
Minor BPS
55.9
0.27
2
78.8
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004415
137523057 - 137620279
97223
ENSAPLT00000039266
137523057 - 137620279
97223