About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137573703_137576408_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137573703 - 137576408
Intron Length:
2706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TAAATCTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TTCTCTCTAAAT
Flanking Amino Acid:
TLGRLAGNTLGSRWSSGVGG
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
73.4
0.53
0.9
70.5
40.5
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
62.8
0.48
1.8
81.82
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039266
137523057 - 137620279
97223
ENSAPLT00000004415
137523057 - 137620279
97223