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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137576599_137578009_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137576599 - 137578009
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTGAT
U12 Branch Point Sequence:
TCTGCTTTGACA
Flanking Amino Acid:
SVIPEELISQAQVVLQGKSR
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.5
39.1
Major BPS
73.5
0.58
1.2
63.4
44.3
Major PPT
75.5
0.57
1
71.7
38.2
Minor 5ss
31
-2.2
3.3
39.7
46.3
Minor BPS
68.6
0.58
1.4
73.66
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045921
137523057 - 137620279
97223
ENSAPLT00000039266
137523057 - 137620279
97223
ENSAPLT00000004415
137523057 - 137620279
97223