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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137578170_137584852_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137578170 - 137584852
Intron Length:
6683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
TCTCCTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTCACTTAAGA
Flanking Amino Acid:
DTASESYLPGEDLMSLLDAD
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
81.5
0.71
0.7
76.3
25.9
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
60.1
0.31
1.8
72.63
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045921
137523057 - 137620279
97223
ENSAPLT00000039266
137523057 - 137620279
97223
ENSAPLT00000004415
137523057 - 137620279
97223