Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137607117_137607506_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

137607117 - 137607506

Intron Length:

390

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTCTA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTACTGAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

GTTTACTGAAAG

Flanking Amino Acid:

WVPDPPAMDPDGDIDFILAP

Intron Amino Acid Position:

1012

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

38.6

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

62.6

0.29

1.2

64.4

Minor 5ss

37.4

-1.4

44.5

Minor BPS

54.1

-0

1.8

64.15

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004191

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039266

137523057 - 137620279

97223

ENSAPLT00000034836

137581533 - 137620279

38747

ENSAPLT00000004415

137523057 - 137620279

97223

ENSAPLT00000045921

137523057 - 137620279

97223