About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137607117_137608021_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137607117 - 137608021
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCTCATTA
Flanking Amino Acid:
WVPDPPAMDPGPSTEPSVVE
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78
38.6
Major BPS
100
1.24
0.5
100
0
Major PPT
82.7
0.73
0.7
77.7
29.5
Minor 5ss
37.4
-1.4
3
42
44.5
Minor BPS
55.2
0.16
1.8
69.51
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036567
137582165 - 137620279
38115