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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137609863_137610807_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137609863 - 137610807
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TCTTTCTTATAG
Flanking Amino Acid:
ARVCHKGHDCKLKRTSPTAY
Intron Amino Acid Position:
1198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
67.7
0.44
1
58
38.9
Major PPT
84.3
0.77
0.7
79.8
25.8
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
57.3
0.09
1.8
63.88
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004415
137523057 - 137620279
97223
ENSAPLT00000045921
137523057 - 137620279
97223
ENSAPLT00000039266
137523057 - 137620279
97223
ENSAPLT00000036567
137582165 - 137620279
38115
ENSAPLT00000034836
137581533 - 137620279
38747