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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137611390_137611492_F

Intron Information:

Intron Rank:
31
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
137611390 - 137611492
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGTGTATC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTCTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAAAATTTAATT
Flanking Amino Acid:
IMFGSQENKDPLSASSRIGH
Intron Amino Acid Position:
1329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.1
0.24
1.3
65.3
40.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
84
0.76
0.9
90.5
22.3
Minor 5ss
42.8
-0.8
2.7
58.4
39.6
Minor BPS
59.1
0.36
1.5
72.01
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039266
137523057 - 137620279
97223
ENSAPLT00000036567
137582165 - 137620279
38115
ENSAPLT00000034836
137581533 - 137620279
38747
ENSAPLT00000004415
137523057 - 137620279
97223
ENSAPLT00000045921
137523057 - 137620279
97223