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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137611623_137612159_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137611623 - 137612159
Intron Length:
537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTGTAATAATT
Flanking Amino Acid:
LIVKCTADILLLDTLLGTLV
Intron Amino Acid Position:
1373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.3
37.4
Major BPS
80
0.75
1
78.6
31
Major PPT
85.3
0.79
0.7
81.6
30.4
Minor 5ss
39.8
-1.1
2.8
47
42.5
Minor BPS
48.2
-0
1.9
70.4
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004415
137523057 - 137620279
97223
ENSAPLT00000045921
137523057 - 137620279
97223
ENSAPLT00000039266
137523057 - 137620279
97223
ENSAPLT00000036567
137582165 - 137620279
38115
ENSAPLT00000034836
137581533 - 137620279
38747