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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137612321_137612800_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137612321 - 137612800
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TTTTCCTTATTT
Flanking Amino Acid:
SVEMASSKKKNNFIPQPIGK
Intron Amino Acid Position:
1426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
81.1
0.7
0.7
74.7
30.6
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
81.5
1.07
1.4
95.91
30.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034836
137581533 - 137620279
38747
ENSAPLT00000004415
137523057 - 137620279
97223
ENSAPLT00000045921
137523057 - 137620279
97223
ENSAPLT00000039266
137523057 - 137620279
97223
ENSAPLT00000036567
137582165 - 137620279
38115