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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137613041_137613929_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137613041 - 137613929
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
PPRPSSDQSSSSSQSQSSYI
Intron Amino Acid Position:
1506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
33.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
79.8
0.67
1
81.3
28.2
Minor 5ss
32.4
-2
3.5
48.3
47.4
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036567
137582165 - 137620279
38115
ENSAPLT00000034836
137581533 - 137620279
38747
ENSAPLT00000004415
137523057 - 137620279
97223
ENSAPLT00000045921
137523057 - 137620279
97223
ENSAPLT00000039266
137523057 - 137620279
97223