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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137614054_137614676_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137614054 - 137614676
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
ATACTCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATAAAATTAAAA
Flanking Amino Acid:
DDIVSADVEEVEVVEGVAGE
Intron Amino Acid Position:
1548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.2
87.9
29.3
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
78.9
0.65
0.9
70
40.6
Minor 5ss
41.5
-0.9
2.9
58.8
45.7
Minor BPS
47.4
-0.2
1.9
59.92
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036567
137582165 - 137620279
38115
ENSAPLT00000034836
137581533 - 137620279
38747
ENSAPLT00000004415
137523057 - 137620279
97223
ENSAPLT00000045921
137523057 - 137620279
97223
ENSAPLT00000039266
137523057 - 137620279
97223