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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137614789_137616905_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137614789 - 137616905
Intron Length:
2117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
EGQHDEHDEDGASSVPAFFS
Intron Amino Acid Position:
1585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.5
31.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.8
0.81
0.9
83.7
31.3
Minor 5ss
45.5
-0.5
2.5
56.3
43.3
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039266
137523057 - 137620279
97223