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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137616014_137616905_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137616014 - 137616905
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTCTTTGACA
Flanking Amino Acid:
VTAATAGSEAGASSVPAFFS
Intron Amino Acid Position:
1629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
85.8
0.81
0.9
83.7
31.3
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
85.7
1.12
0.9
90.32
23.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034836
137581533 - 137620279
38747
ENSAPLT00000004415
137523057 - 137620279
97223
ENSAPLT00000045921
137523057 - 137620279
97223
ENSAPLT00000036567
137582165 - 137620279
38115