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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137618718_137619041_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137618718 - 137619041
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAT
U12 Branch Point Sequence:
TTTTCTCTCACT
Flanking Amino Acid:
EASLRTLEGRRRATLLSARQ
Intron Amino Acid Position:
1875

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
64.2
0.35
1.3
65.8
39.5
Major PPT
76.6
0.6
0.8
71.4
34.3
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
62.9
0.49
2.1
88.42
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004191
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034836
137581533 - 137620279
38747
ENSAPLT00000004415
137523057 - 137620279
97223
ENSAPLT00000045921
137523057 - 137620279
97223
ENSAPLT00000039266
137523057 - 137620279
97223
ENSAPLT00000036567
137582165 - 137620279
38115