About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137625558_137625938_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
137625558 - 137625938
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TACTTTGCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTTTCTTCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
70
0.45
0.9
65
36.1
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
77.2
0.93
1.4
92.06
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027038
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039710
137625346 - 137629060
3715