Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137626053_137627154_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

137626053 - 137627154

Intron Length:

1102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

GCTTTCACTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAC

U12 Branch Point Sequence:

GTGGCTTTCACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

89.9

23.2

Major BPS

77.7

0.69

30.2

Major PPT

66.7

0.38

1.1

69.3

Minor 5ss

48.6

-0.1

2.8

71.8

38.1

Minor BPS

54.9

0.24

1.9

71.92

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027038

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039710

137625346 - 137629060

3715