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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137641375_137641913_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137641375 - 137641913
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCTTCTACA
Flanking Amino Acid:
IDTYIKDPEKRDFLFNAIET
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
92.7
0.96
0.6
88.1
21.9
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
63.5
0.42
1.9
79.64
36.2

Associated Gene:

Gene:
RRM2B
Ensembl Gene ID:
ENSAPLG00000005483
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039190
137637913 - 137647798
9886
ENSAPLT00000005673
137636768 - 137647798
11031