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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137646034_137647074_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137646034 - 137647074
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTAACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACT
Flanking Amino Acid:
IIVNAVEIEQEFLTEALPVG
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
83.8
0.76
0.8
74.7
39.9
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
72.4
0.78
1.3
83.79
37.4

Associated Gene:

Gene:
RRM2B
Ensembl Gene ID:
ENSAPLG00000005483
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039190
137637913 - 137647798
9886
ENSAPLT00000005673
137636768 - 137647798
11031