About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137647189_137647645_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
137647189 - 137647645

Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAAGAGAA

5'SS Class:
strong_major

3'SS Sequence:
TTACTTTCCCCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CAATAAT

U12 Branch Point Sequence:
TAATGTTTACTT

Flanking Amino Acid:
RLLMELGFSKVFHAENPFDF

Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
91.4
0.98
0.8
80.4
26.8

Major BPS
67.7
0.44
1.1
67.9
34.4

Major PPT
80.3
0.68
0.8
73.3
36.9

Minor 5ss
29.7
-2.3
3.3
37.8
47

Minor BPS
49.6
0.05
2
69.35
42.2

Associated Gene:

Gene:
RRM2B

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

137637913 - 137647798
9886

137636768 - 137647798
11031