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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137664796_137664975_F

Intron Information:

Intron Rank:
151142
Intron Class:
major
Intron Phase:
Intron Coordinates:
137664796 - 137664975
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
67.2
33.2
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
23.2
-3.1
3.2
28.6
43.7
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031198
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028323
137664676 - 137666161
1486