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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137678880_137679209_F

Intron Information:

Intron Rank:
131308
Intron Class:
major
Intron Phase:
Intron Coordinates:
137678880 - 137679209
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TCTTTCAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
71.2
0.48
1
67.4
36.9
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
55.3
0.16
2
71.45
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020535
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023995
137678144 - 137680309
2166
ENSAPLT00000029932
137678144 - 137680309
2166