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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137687840_137689411_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
137687840 - 137689411
Intron Length:
1572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGAGCAG
5'SS Class:
weak_major
3'SS Sequence:
AATCCATCTCGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATCCAT
U12 Branch Point Sequence:
CCAGTGTGAAAT
Flanking Amino Acid:
CSPPMGGGAPASLIIAMKGN
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.11
1.1
41.1
41.2
Major BPS
60.7
0.27
1.2
70.5
35.7
Major PPT
49.3
-0
1.7
52
42.1
Minor 5ss
23.1
-3.1
3.3
28.5
43.9
Minor BPS
39.3
-0.7
2.1
49.81
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024625
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036608
137687740 - 137689752
2013