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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13769774_13773008_F

Intron Information:

Intron Rank:
1
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
13769774 - 13773008
Intron Length:
3235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
ACTCCTAACCCAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CAAGCCTTGACT
Flanking Amino Acid:
VERATWNDRFSDIYALCVAY
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48.5
-0
1.4
55
44.6
Major BPS
100
1.24
0.5
100
0
Major PPT
64.2
0.32
1
55.3
38.5
Minor 5ss
95.1
1.52
0.8
90.6
20
Minor BPS
65.2
0.56
1.5
72.69
44.2

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044996
13769635 - 13813374
43740
ENSAPLT00000036990
13769635 - 13815321
45687
ENSAPLT00000030001
13769635 - 13813374
43740
ENSAPLT00000014921
13769635 - 13808739
39105