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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13773112_13774935_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13773112 - 13774935
Intron Length:
1824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTAT
5'SS Class:
major
3'SS Sequence:
TCTTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACACAT
U12 Branch Point Sequence:
TCTTCCTTCACA
Flanking Amino Acid:
LENHVRHLHKRVLESEEQVL
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
74.9
38.1
Major BPS
57.6
0.19
1
64.6
32.2
Major PPT
84.6
0.78
0.7
79.5
26
Minor 5ss
53.8
0.13
2.6
73.2
43.7
Minor BPS
75.6
0.8
1.7
83.03
38.2

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036990
13769635 - 13815321
45687
ENSAPLT00000030001
13769635 - 13813374
43740
ENSAPLT00000014921
13769635 - 13808739
39105
ENSAPLT00000044996
13769635 - 13813374
43740