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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137818022_137818583_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
137818022 - 137818583
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGTCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
AAATACTGATTT
Flanking Amino Acid:
IAKLYKKSKKGILVNMDDNI
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
73.2
0.52
0.9
66.1
39.6
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
46.9
-0.1
1.8
62.96
40.6

Associated Gene:

Gene:
GRHL2
Ensembl Gene ID:
ENSAPLG00000002882
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002930
137817888 - 137878406
60519