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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137818649_137823368_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137818649 - 137823368
Intron Length:
4720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAGTCTTTAATA
Flanking Amino Acid:
SPTVKGLMEAISEKYGLPVE
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
85.6
31.2
Major BPS
80
0.75
1
78.6
31
Major PPT
77.9
0.63
0.9
74
40.4
Minor 5ss
40.8
-1
2.8
55.7
41.6
Minor BPS
76.2
0.82
1.1
76.15
35.4

Associated Gene:

Gene:
GRHL2
Ensembl Gene ID:
ENSAPLG00000002882
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002930
137817888 - 137878406
60519