About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137823455_137827283_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137823455 - 137827283
Intron Length:
3829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAC
U12 Branch Point Sequence:
CCAAGCTTGACT
Flanking Amino Acid:
KQMKEEGLKRVLLYVRKETD
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
78.9
35.3
Major BPS
60.9
0.27
1.2
55.1
42.1
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
41.9
-0.9
3.5
64.8
46.5
Minor BPS
49.9
0.07
1.9
64.29
46.1

Associated Gene:

Gene:
GRHL2
Ensembl Gene ID:
ENSAPLG00000002882
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002930
137817888 - 137878406
60519