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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137828602_137830827_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137828602 - 137830827
Intron Length:
2226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
HFGNLQRTGQVYYNTDDERE
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.5
0.75
0.7
82.2
28.1
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
GRHL2
Ensembl Gene ID:
ENSAPLG00000002882
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002930
137817888 - 137878406
60519