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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137848407_137853023_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
137848407 - 137853023
Intron Length:
4617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATAGTCC
5'SS Class:
weak_major
3'SS Sequence:
TTGATTTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTGCTGTTGATT
Flanking Amino Acid:
CFRHPISKVRSVVMVVFSED
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.1
53.4
38.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.9
0.63
0.8
77.2
36.9
Minor 5ss
43
-0.8
3.1
50.4
46.4
Minor BPS
46.7
-0.1
2.1
63.08
42.1

Associated Gene:

Gene:
GRHL2
Ensembl Gene ID:
ENSAPLG00000002882
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002930
137817888 - 137878406
60519