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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137856059_137859276_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
137856059 - 137859276
Intron Length:
3218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTATGCATAATT
Flanking Amino Acid:
SDTFKDGGTEKYRSVSVGAE
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.91
0.7
88.4
28.3
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
52.6
0.16
2.1
73.52
43.5

Associated Gene:

Gene:
GRHL2
Ensembl Gene ID:
ENSAPLG00000002882
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002930
137817888 - 137878406
60519