About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13787721_13790459_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13787721 - 13790459
Intron Length:
2739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GAGTTCTGAATA
Flanking Amino Acid:
LIRMLLREIKNPSTPSTRQA
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
70.4
0.46
0.7
61.6
29.1
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
58
0.25
1.4
61.9
38.2

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030001
13769635 - 13813374
43740