About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13787721_13793955_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13787721 - 13793955
Intron Length:
6235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCACTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
LIRMLLREIKNDRCGEDPNQ
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
30.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.5
0.69
0.9
77.7
35.2
Minor 5ss
31.6
-2.1
3.2
41.8
38.8
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014921
13769635 - 13808739
39105
ENSAPLT00000044996
13769635 - 13813374
43740
ENSAPLT00000036990
13769635 - 13815321
45687