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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13790547_13793955_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13790547 - 13793955
Intron Length:
3409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGAAAA
5'SS Class:
major
3'SS Sequence:
TTCACTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTGTTTTCACT
Flanking Amino Acid:
NTTGSRQDLEFDRCGEDPNQ
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1
67.7
31.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
80.5
0.69
0.9
77.7
35.2
Minor 5ss
29.9
-2.3
2.9
37.3
41.2
Minor BPS
61.3
0.44
1.8
82.56
39.6

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030001
13769635 - 13813374
43740