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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13794053_13794144_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13794053 - 13794144
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGATACA
5'SS Class:
major
3'SS Sequence:
TTCTCCCCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTGCACTTAAAA
Flanking Amino Acid:
EQYKKKFPLKFYQEIFECPF
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
74
36.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
80.1
0.68
0.7
78.2
23.7
Minor 5ss
34
-1.8
3
43
44
Minor BPS
61.7
0.36
1.6
71.63
39.7

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044996
13769635 - 13813374
43740
ENSAPLT00000036990
13769635 - 13815321
45687
ENSAPLT00000030001
13769635 - 13813374
43740
ENSAPLT00000014921
13769635 - 13808739
39105