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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_137943524_137945571_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
137943524 - 137945571
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTAGACTAAAT
Flanking Amino Acid:
GRPEAAAPRPDMARGQQKIQ
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.3
39.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
23.7
-3
3.3
23.4
37.6
Minor BPS
42.2
-0.5
2.3
65.37
44

Associated Gene:

Gene:
ZNF706
Ensembl Gene ID:
ENSAPLG00000022331
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046556
137943250 - 137946863
3614