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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13798685_13800786_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13798685 - 13800786
Intron Length:
2102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCCATTTTATGT
Flanking Amino Acid:
DQHFMSALDKALTSVVNYRE
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.1
0.57
0.9
70.6
35.1
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
45.6
-0.2
1.9
58.94
45.1

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044996
13769635 - 13813374
43740
ENSAPLT00000036990
13769635 - 13815321
45687
ENSAPLT00000030001
13769635 - 13813374
43740
ENSAPLT00000014921
13769635 - 13808739
39105