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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138002034_138016488_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138002034 - 138016488
Intron Length:
14455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
ACGTTCACAACA
Flanking Amino Acid:
ELRDICNDVLSLLEKFLIPN
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
78.6
30
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
83.5
0.75
0.9
80.8
36.8
Minor 5ss
29.8
-2.3
3
37.3
41.2
Minor BPS
48.3
-0.1
1.8
58.49
41.2

Associated Gene:

Gene:
YWHAZ
Ensembl Gene ID:
ENSAPLG00000002635
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039630
137999980 - 138021798
21819
ENSAPLT00000002676
137999980 - 138024339
24360