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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13800847_13801236_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13800847 - 13801236
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAACTTGAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACT
Flanking Amino Acid:
PKSICKAPELLAKYCDNLLK
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
63.5
0.3
1.7
75.6
38.4
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
81.9
1.08
1
90.89
33.1

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044996
13769635 - 13813374
43740
ENSAPLT00000036990
13769635 - 13815321
45687
ENSAPLT00000030001
13769635 - 13813374
43740
ENSAPLT00000014921
13769635 - 13808739
39105