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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13801366_13801454_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13801366 - 13801454
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCATGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAATCCTTATAT
Flanking Amino Acid:
YIDDKDVFQKFYARMLAKRL
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86.4
0.82
0.8
82.2
28.6
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
60.8
0.42
1.7
74.43
41.5

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014921
13769635 - 13808739
39105
ENSAPLT00000044996
13769635 - 13813374
43740
ENSAPLT00000036990
13769635 - 13815321
45687
ENSAPLT00000030001
13769635 - 13813374
43740