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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138020100_138021678_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138020100 - 138021678
Intron Length:
1579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTTTTGGATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
AGTCTCTCACAC
Flanking Amino Acid:
IMQLLRDNLTAFNRDSAC*
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
70.7
0.47
1
66
40
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
44
-0.4
1.8
52.57
38.1

Associated Gene:

Gene:
YWHAZ
Ensembl Gene ID:
ENSAPLG00000002635
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039630
137999980 - 138021798
21819