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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13802692_13804114_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13802692 - 13804114
Intron Length:
1423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTTAG
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
GTGTGATTAACT
Flanking Amino Acid:
PQELEKSVQMFELFYSQHFS
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.6
40.2
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
88.8
0.87
0.7
83.9
31
Minor 5ss
38.3
-1.3
3.1
45
44.5
Minor BPS
58.2
0.34
2.1
78.01
43.9

Associated Gene:

Gene:
CUL2
Ensembl Gene ID:
ENSAPLG00000014251
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014921
13769635 - 13808739
39105
ENSAPLT00000044996
13769635 - 13813374
43740
ENSAPLT00000036990
13769635 - 13815321
45687
ENSAPLT00000030001
13769635 - 13813374
43740