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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138048753_138048859_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
138048753 - 138048859
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCCAT
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
SAFGNILSCKVVCDENGSKG
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.1
76.2
32.9
Major BPS
68.5
0.46
1.2
78.5
35.1
Major PPT
83.4
0.75
0.8
81.5
29
Minor 5ss
29.3
-2.4
2.9
33.7
41.5
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040896
138043286 - 138056982
13697
ENSAPLT00000001456
138043286 - 138056982
13697