About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_138048976_138050702_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
138048976 - 138050702
Intron Length:
1727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTCATGAAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTACTTTATTC
Flanking Amino Acid:
MNGMLLNDRKVFVGRFKSRK
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
52.4
0.06
1
44.9
40.3
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
64.4
0.43
1.6
74.73
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040896
138043286 - 138056982
13697
ENSAPLT00000001456
138043286 - 138056982
13697